rs31523085 SNP Detail

Summary

• ID
  rs31523085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90571258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAATGA CATCATGAAA
  TTTTCAGGCA AATGGATGGA ACTAGAAAAA AAATCCATCT GAACAAGGCA ATCCAGACCC
  AGAAAGACAA ACATGATATG TAGTCACTTA TAAGTGGATA TTAGCTGTTA AGTAATGAGT
  AATCATACTA TAATCCATAG ACCCAGAAAA ATTTAGATAA AGATGAGAGG CCTAGTGGGG
  R
  TCACAGATCT CCCAGGGAAG GGGAAATAGA GTAGATTTTG TGGGTGCATG GTGGATAAGG
  GTGAGAGGGA TGGGAACAGG AGAGATCAGA TTGGGGAGGG AGAGACAGAG GCAGAGAGAA
  CAGGAGAGAC GACTGAAATA GGTGGGCATT TAGGGGGTGA TATGGGAACT TAGTGCAGTG
  GAAACTTCCT GGAACATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45543186	mCV24984079	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135478434	ENSMUSSNP422770	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31523085					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90571258 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	467 bp proximal