rs31522936 SNP Detail

Summary

• ID
  rs31522936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130508750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA AATTCTGACG CTGACATGGC
  M
  AGAAACTAGC GGAAGCCTTC CGCCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45541966	mCV22791469	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C		A
ss61080502	NES16598767	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	A		C		A	A		C	A	A	C		A
ss135898397	ENSMUSSNP593232	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							A
ss320966224	CHEV_3_130418019	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31522936					SNP	A	A	C	A	C	C	A	C	C	A	A	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080502	NES16598767	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130508750 () rs orientation: forward

Symbol	Name	Function Class
Rr398018	regulatory region 398018	189 bp upstream
Rr585199	regulatory region 585199	765 bp distal
Rr585200	regulatory region 585200	within coordinates