rs3152056 SNP Detail

Summary

• ID
  rs3152056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36741662 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAAA GACAATTCTC AAGGAGATGT
  R
  TGCAAAGTGC AGGCATGGTA CAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46900875	NES10807681	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	T	C	C	T	C	T	T		T	C	C	C		C
ss134787380	ENSMUSSNP2361222	ENSEMBL	ENSEMBL_Sanger	r	SNP		C
ss320704370	CHEV_3_36586435	CHEVERUD	SCREENING_POP	r	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3152056					SNP	G	G	G	G	A	G	G	A	G	A	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46900875	NES10807681	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36741662 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	1420 bp proximal
Rr575390	regulatory region 575390	1513 bp proximal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	Intron