rs3152054 SNP Detail

Summary

• ID
  rs3152054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36744848 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCT GTAATTTATG GAGGCCGAAA
  Y
  GGAAGAATTG CTGTGAGGTG TGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517572	mCV22651675	ABI	CRAMUS_MOUSE	r	SNP	A	G	A
ss134787395	ENSMUSSNP5777899	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		A
ss320704378	CHEV_3_36589621	CHEVERUD	SCREENING_POP	r	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3152054					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36744848 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	110 bp distal
Rr575390	regulatory region 575390	1652 bp distal
Rr575391	regulatory region 575391	42 bp distal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	572 bp upstream
Tssr33044	transcription start site region 33044	527 bp upstream