rs3151895 SNP Detail

Summary

• ID
  rs3151895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666092 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGCA GGCTCACGTT GCCATCCTTA
  Y
  TGGTACCTTG GTGTGTAACA GGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45384390	mCV24313325	ABI	CRAMUS_MOUSE	r	SNP	A	A					G		A
ss46899213	NES10812927	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	G	A	A		G	A	G	G		G	A	G	G		A
ss134784764	ENSMUSSNP6324954	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							A
ss320703492	CHEV_3_36510865	CHEVERUD	SCREENING_POP	r	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3151895					SNP	T	T	T	C	T	T	C	C	T	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46899213	NES10812927	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666092 () rs orientation: reverse

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	1153 bp proximal
Rr575383	regulatory region 575383	678 bp proximal
Rr575384	regulatory region 575384	1332 bp proximal
Rr575385	regulatory region 575385	1485 bp proximal
Tssr28874	transcription start site region 28874	1539 bp upstream
Tssr33039	transcription start site region 33039	1396 bp downstream
Tssr33040	transcription start site region 33040	1427 bp downstream
Tssr33041	transcription start site region 33041	1475 bp downstream
Tssr33042	transcription start site region 33042	1518 bp downstream
Tssr33043	transcription start site region 33043	1546 bp downstream