GGGCA GGCTCACGTT GCCATCCTTA Y TGGTACCTTG GTGTGTAACA GGTGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45384390 | mCV24313325 | ABI | CRAMUS_MOUSE | r | SNP | A | A | G | A | ||||||||||||||
ss46899213 | NES10812927 | PERLEGEN | MM_PANEL2 | r | SNP | A | A | A | G | A | A | G | A | G | G | G | A | G | G | A | |||
ss134784764 | ENSMUSSNP6324954 | ENSEMBL | ENSEMBL_Sanger | r | SNP | A | A | ||||||||||||||||
ss320703492 | CHEV_3_36510865 | CHEVERUD | SCREENING_POP | r | SNP | A | A | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs3151895 | SNP | T | T | T | C | T | T | C | C | T | C | C | T | C | T | C | C | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46899213 | NES10812927 | PERLEGEN | MM_PANEL | r | SNP | A/G |
Location: Chr3:36666092 () rs orientation: reverse | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bbs7 | Bardet-Biedl syndrome 7 | Intron | ||||||
Cpgi13088 | CpG island 13088 | 1153 bp proximal | ||||||
Rr575383 | regulatory region 575383 | 678 bp proximal | ||||||
Rr575384 | regulatory region 575384 | 1332 bp proximal | ||||||
Rr575385 | regulatory region 575385 | 1485 bp proximal | ||||||
Tssr28874 | transcription start site region 28874 | 1539 bp upstream | ||||||
Tssr33039 | transcription start site region 33039 | 1396 bp downstream | ||||||
Tssr33040 | transcription start site region 33040 | 1427 bp downstream | ||||||
Tssr33041 | transcription start site region 33041 | 1475 bp downstream | ||||||
Tssr33042 | transcription start site region 33042 | 1518 bp downstream | ||||||
Tssr33043 | transcription start site region 33043 | 1546 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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