rs31516714 SNP Detail

Summary

• ID
  rs31516714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104847496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG GCACCTCCTT TGGAAAAGCA
  Y
  CTCTGATGGA TCTCATTCAT ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45541478	mCV27551452	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C		C
ss60431378	NES15935834	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T	C	C	C	C	C
ss135572351	ENSMUSSNP6993315	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31516714					SNP	?	T	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431378	NES15935834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104847496 () rs orientation: forward

Symbol	Name	Function Class
Gm65748	predicted gene, 65748	636 bp upstream
Rr582630	regulatory region 582630	1966 bp distal
Rr582631	regulatory region 582631	1361 bp distal
Rr582632	regulatory region 582632	505 bp proximal
Rr582633	regulatory region 582633	647 bp proximal