rs3151429 SNP Detail

Summary

• ID
  rs3151429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36916349 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATCTT AGGATAGCAA GAAGAGAAGT
  R
  TAATTCACAG CAGACTTCCT CTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss5073767	WI_WGS_3_36742557	WI	MOUSE	r	SNP					C	T
ss45486975	mCV24767450	ABI	CRAMUS_MOUSE	r	SNP	C	C	C			T	C
ss46903567	NES10829700	PERLEGEN	MM_PANEL2	r	SNP				C					T	C
ss134792452	ENSMUSSNP850938	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C				C
ss320705821	CHEV_3_36761122	CHEVERUD	SCREENING_POP	r	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs3151429					SNP	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46903567	NES10829700	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36916349 () rs orientation: reverse

Symbol	Name	Function Class
Bltp1	bridge-like lipid transfer protein family member 1	904 bp upstream
Rr575409	regulatory region 575409	585 bp distal
Rr575410	regulatory region 575410	416 bp proximal
Rr575411	regulatory region 575411	917 bp proximal
Tssr28876	transcription start site region 28876	189 bp downstream
Tssr28877	transcription start site region 28877	160 bp downstream
Tssr28878	transcription start site region 28878	902 bp upstream
Tssr28879	transcription start site region 28879	948 bp upstream
Tssr28880	transcription start site region 28880	966 bp upstream
Tssr28881	transcription start site region 28881	979 bp upstream