rs3151427 SNP Detail

Summary

• ID
  rs3151427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36916787 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGTAG GAAAAGGAAG CCAGAAAAAG
  R
  AGAGTCTGCT AGCTATGGCA TGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45470453	mCV24767457	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	T
ss134792461	ENSMUSSNP6184084	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	T		T
ss320705824	CHEV_3_36761560	CHEVERUD	SCREENING_POP	r	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3151427					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36916787 () rs orientation: reverse

Symbol	Name	Function Class
Bltp1	bridge-like lipid transfer protein family member 1	466 bp upstream
Cpgi13092	CpG island 13092	145 bp proximal
Rr575409	regulatory region 575409	1023 bp distal
Rr575410	regulatory region 575410	within coordinates
Rr575411	regulatory region 575411	479 bp proximal
Tssr28876	transcription start site region 28876	627 bp downstream
Tssr28877	transcription start site region 28877	598 bp downstream
Tssr28878	transcription start site region 28878	464 bp upstream
Tssr28879	transcription start site region 28879	510 bp upstream
Tssr28880	transcription start site region 28880	528 bp upstream
Tssr28881	transcription start site region 28881	541 bp upstream