rs3151425 SNP Detail

Summary

• ID
  rs3151425
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36919202 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAAAT GGTCTCTGCT ATATAGTACT
  C
  TATAAATATC TATTAAATGA ATTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134792482	ENSMUSSNP3095701	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G	G
ss320705837	CHEV_3_36763975	CHEVERUD	SCREENING_POP	r	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3151425					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36919202 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bltp1	bridge-like lipid transfer protein family member 1			Intron
				Noncoding-Transcript-Variant
Cpgi13092	CpG island 13092			1462 bp distal
Rr575410	regulatory region 575410			1937 bp distal
Rr575411	regulatory region 575411			983 bp distal
Tssr28878	transcription start site region 28878			1906 bp downstream
Tssr28879	transcription start site region 28879			1889 bp downstream
Tssr28880	transcription start site region 28880			1876 bp downstream
Tssr28881	transcription start site region 28881			1863 bp downstream