rs31507517 SNP Detail

Summary

• ID
  rs31507517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115856206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAATGA AGGAAAGATA
  AGACGCAGTT GGGAAAACTG GGAATGAAGG AAAGATAAGA CGCAGTTGGG AAAACTGGGA
  TTGTGTGGAC CACAACTCTC CGGAAGCCCA GTGTGTTTAT TGTATGAAGT TGAATATAGA
  GGCAGTATTC TTACTTACAG CTGAGTGAAG AAGCTGGATC AAGGAGACAG GTTTAGCTAA
  Y
  CTCTGTCAGA GCAGTCTCAG CAGGGCACAG TCTTCAGGCC ATAAACATCT GGGAGGAAAG
  TTGTCTTGGA CATTTTCTGC ATGTATTGCC AATATCCACC CATGGAGCAG AAAGGGAAGG
  CTCTACCATC TCCCCCAGTC TTACTCGAAG CTGTGGCATC CTTGCTTGAC ACGAAGCCAT
  GCGAGATTAC ACATTCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48059157	NES11874105	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31507517					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059157	NES11874105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115856206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637086	regulatory region 637086			214 bp distal
Rr637087	regulatory region 637087			1485 bp proximal