rs31507104 SNP Detail

Summary

• ID
  rs31507104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115893772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTGGC CATTGATGTG
  CATCTCAGAT AAATGGCTGA CAAGCCCAGG TGCAGCGTGA GCACAGAGAG CCAGGGAAGA
  TGCCATCTGC CCATCCCACC AGGATCCTTT GGTGTGTTTC CACTGCTGGG CATAACAGGT
  GCTGACCCAG TGGACAGGGC TGGGAGGGAT CTATGCTTAG GTGTTTCCTG GCCAGGAGCT
  Y
  TGCCCAGCTA AGGCCTACTG TCATCCAGGA TGGACTACTC TTAAGCAGGA CACTTGTCCA
  TCGCTGCCCT CTTGGCCCCT AGCCAAGGAG CAGCATAGGA GGAAAAGATA TCACTTGACA
  CATTTCCCCT CCTTCCCTCC CGTGCTCCTC CCACACAGCA GATCCTGCCC AGAAGGACGC
  GATGCTGGAC AAGTTTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48059537	NES11873228	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31507104					SNP	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059537	NES11873228	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115893772 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637097	regulatory region 637097			1420 bp distal
Tssr58330	transcription start site region 58330			966 bp downstream