rs31505805 SNP Detail

Summary

• ID
  rs31505805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115854834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTCG GGAGGCAGAG
  GCAGGTAGAT TTCTGAGGTG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG
  GGCTACACAG AGAAACCCTG TCTCGAAAAA CAACAACAAC AAAAAAGCAA CCCCCCCCCA
  AAAAAAAGAA AGAAAGTGAG GCCTCTTCTC CACCTCCAGC AGCCAAGGGA GGCTAATCCT
  Y
  TAAGTTGGCA GAAAGAGCTG GGCAGTGGTG GCACATGCTT TTAATCCTAG AGGTTGGGAG
  GCAGAGACAG GCAGATCTTT GTGAATTTGA GGCCAGCCTG GACTCCATAG TTCCAGAACA
  ACTGAAGCTA CACAGAGAAC CCTTGTCTTA AAAAGAAATT GCAGAGAGAC AGTGAGAGGT
  GATGATCTGG AGGGTGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48059135	NES11874172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31505805					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059135	NES11874172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115854834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637086	regulatory region 637086			895 bp proximal