rs31505007 SNP Detail

Summary

• ID
  rs31505007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115853797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTCACGG CTGAGTAATA
  CTCCACTGTG TATATATTCC ATTTGGATGC TCATCAGCTA ATGAACACTG GATTGTTCCC
  ACCTGTTGCC TACTGTGAAC GATGCTGCTC TGAACATAAG CAAAGTTTAG ATGAACAGTG
  AGTGAGACCA TGCATACAGT GTTACCAAGA AGTGAAGGGC TAGACCTGGG CTGAGATGCC
  R
  GGCAGTGCAC CTCAGCATTT ACCATGCTTC CAGACCCTGG CCTGCACTGT GGTGTTCATC
  ATACGCCACT GGATGTTTCT GGACACCAGA AATTGTCAAT TGGAGCCACA AGTGAAGCAC
  ACTGTCTGCA CCTCGCACTA GGCTGCATTC TCTGTCTTTG TCTCTGACAC ACACTGGAGG
  TCTCTCTGGG GAGAGCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48059127	NES11874228	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	A	A	A		G	A	G	G		A
ss321916831	CHEV_6_115826854	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31505007					SNP	A	A	G	A	A	G	G	A	A	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059127	NES11874228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115853797 () rs orientation: forward

Symbol	Name	Function Class
Ift122	intraflagellar transport 122	Intron
Rr637086	regulatory region 637086	1932 bp proximal