rs31504853 SNP Detail

Summary

• ID
  rs31504853
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115738350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTTGAC TGACAGCTTT
  CCTGCATTCC AGAACTACTA CCCAGACCCC TGACTCAGCA GGCACGTGCA CCCTACAGAC
  AACAGTCAGA CAGCCGAGAC TCAGTTTCCC CATTTGTTAA AATGATAAGG CAGCAGCTCC
  CTACATATGA CAGGGTGCTG TGTCTGCTGG CCAATGACAC CCAGCCTTTG CTATGCCTTA
  K
  TGTTCTTGGG ATTAGACCAT GGGATTCTTG AAGAAGCCCC AGTGACTTGT TAGACCTGAT
  ACATACATAT GCCCTATAAG TGTAGAAGGA AAAGAAAAGA AATCTCCCCT GCTGTGAGCC
  CCAGGGGTCT GGCTGTTTAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACCCCAAGGA TGTCTGGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058283	NES11879137	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31504853					SNP	T	T	G	T	T	G	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058283	NES11879137	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115738350 () rs orientation: forward

Symbol	Name	Function Class
Rr637045	regulatory region 637045	1628 bp distal
Rr637046	regulatory region 637046	482 bp proximal
Rr637047	regulatory region 637047	966 bp proximal
Tmem40	transmembrane protein 40	Intron
Tssr1971	transcription start site region 1971	1657 bp downstream
Tssr58324	transcription start site region 58324	865 bp upstream
Tssr62532	transcription start site region 62532	933 bp downstream
Tssr62533	transcription start site region 62533	957 bp downstream