rs31503513 SNP Detail

Summary

• ID
  rs31503513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115737816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTACTC ACTTCAGATG
  AGCAAGAGAC AAAATCACCT GGAAACCCCT TAGAAACTGC TAAACCCCCG GGGCCCTTCC
  TAGCCACATG CAATCACAAG TTGTCCCCAG GCTATCCTAG CACATCTGCG CTGACACATG
  CTCATGTCAG AGCCCCACCA GTCTGAATGT TTTCTGCCAT CTTGAAGGCT TAAATGACTG
  R
  CACACAGGAA GTGCCTTCTC AAAGGAATCG TCTAACTTTG GTTTCCCTTC TTCTGATTCT
  GTCATGAGGC ACTTCCCCCC ACCCCCACCC CGTGCCTCAG TTTCCCTCTC TGCCTCTCCT
  GAAGCACCTG CTTGGATATT TACCTGGAGC CTGACAGCAG TACCTCCGAG TGGGCAGATG
  TCATAGTCAG GGTGGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058263	NES11879153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31503513					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058263	NES11879153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115737816 () rs orientation: forward

Symbol	Name	Function Class
Rr637044	regulatory region 637044	1867 bp distal
Rr637045	regulatory region 637045	1094 bp distal
Rr637046	regulatory region 637046	1016 bp proximal
Rr637047	regulatory region 637047	1500 bp proximal
Tmem40	transmembrane protein 40	Intron
Tssr1971	transcription start site region 1971	1123 bp downstream
Tssr58324	transcription start site region 58324	1399 bp upstream
Tssr62529	transcription start site region 62529	1855 bp upstream
Tssr62530	transcription start site region 62530	1835 bp upstream
Tssr62531	transcription start site region 62531	1819 bp upstream
Tssr62532	transcription start site region 62532	1467 bp downstream
Tssr62533	transcription start site region 62533	1491 bp downstream