rs31502579 SNP Detail

Summary

• ID
  rs31502579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115751199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAACTGGG GAAAACTGTG
  ATCAACTTTA GGGAACAGCT ATTGCTCTCG GCTTTGGGAA CCTGAAGTCC GTCCTTAATT
  CATCTCAGGT TCTTTGGCTG TGTGGAACCT GGTAGAATCT GGAATTGCCA TCCCATGTCC
  CTGTTTGCAT GAGTGCCATT GAGAGAGCAA AGTCAAGGGG TCTTCAAGGC ACAATCGGGA
  R
  AAGGCGTGGT CAGGGCCGGG TGGTGAGCTG CTGGTGCCCA TGCTGAGCAG AGCTGTCCAG
  GAGAGGGGGC CAGGCCCGTT ACTTCAGTCC TGCTCGGGAC AGGAGGGGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48058349	NES11878660	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31502579					SNP	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058349	NES11878660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115751199 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	319 bp upstream
Cpgi17874	CpG island 17874	321 bp proximal
Mir7660	microRNA 7660	1419 bp upstream
Rr368154	regulatory region 368154	within coordinates
Rr637054	regulatory region 637054	1826 bp distal
Rr637055	regulatory region 637055	1379 bp distal
Rr637056	regulatory region 637056	1392 bp distal
Rr637057	regulatory region 637057	within coordinates
Rr637058	regulatory region 637058	311 bp proximal
Tssr58325	transcription start site region 58325	326 bp upstream