rs31502577 SNP Detail

Summary

• ID
  rs31502577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115750386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGTAT TCACAGTCCC
  CTGAAGGGCT GTCTCCCCTT CTCATTCATG AAACAATGAC TTTCTTCTGG GATGGCCACA
  TAGGTGTGAG CGAGACAGGA GCAAGAAGAC TAGGAGAAAT GTAGAGGTCC CTAGCCTCCA
  AGGCTTGGGA CTTTGTAGCC ACTGTTCAGT CATCTAGAGG AAGAGAAGTT GGATTAGGAG
  Y
  CGGAAATCAA AGATGTAGCA GATGTCTCAT TTAAATCCTT CCTTTCTTTA TCTTTTTTTC
  TAAAGACAGG ATCTATGTAG CCAAGGTTGA AATTTTGATC CTCCTGCCTT CCTGCCTTCA
  CCTGCCAAGT TCTGGAATTG CAGGTATGAG ACACCCCAGC CCCCTAGATT TCCTTTTACC
  AACCTGAGGG TGTGGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48058347	NES11878739	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31502577					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058347	NES11878739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115750386 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	1132 bp upstream
Cpgi17874	CpG island 17874	1134 bp proximal
Rr368154	regulatory region 368154	769 bp upstream
Rr637053	regulatory region 637053	1233 bp distal
Rr637054	regulatory region 637054	1013 bp distal
Rr637055	regulatory region 637055	566 bp distal
Rr637056	regulatory region 637056	579 bp distal
Rr637057	regulatory region 637057	623 bp proximal
Rr637058	regulatory region 637058	1124 bp proximal
Tssr58325	transcription start site region 58325	1139 bp upstream