rs31502575 SNP Detail

Summary

• ID
  rs31502575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115750181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA TATATATATA
  TATATATATA TATATATATA TATATATATA TACACACACA TATACATATG TGTATGTGAG
  CAAGAAACTC CTAGATACAA AATACAAATA AATAATAATG ATAAAATGTA AAAAATTCCA
  ATTTTGTCTC CACTGTCATT TACTAAATAA CTGCCTAAGG TGCCAAGTGA TTGCTATATT
  Y
  CTCCCTGGGA GTATTCACAG TCCCCTGAAG GGCTGTCTCC CCTTCTCATT CATGAAACAA
  TGACTTTCTT CTGGGATGGC CACATAGGTG TGAGCGAGAC AGGAGCAAGA AGACTAGGAG
  AAATGTAGAG GTCCCTAGCC TCCAAGGCTT GGGACTTTGT AGCCACTGTT CAGTCATCTA
  GAGGAAGAGA AGTTGGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48058345	NES11878735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31502575					SNP	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058345	NES11878735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115750181 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	1337 bp upstream
Cpgi17874	CpG island 17874	1339 bp proximal
Rr368154	regulatory region 368154	974 bp upstream
Rr637053	regulatory region 637053	1028 bp distal
Rr637054	regulatory region 637054	808 bp distal
Rr637055	regulatory region 637055	361 bp distal
Rr637056	regulatory region 637056	374 bp distal
Rr637057	regulatory region 637057	828 bp proximal
Rr637058	regulatory region 637058	1329 bp proximal
Tssr58325	transcription start site region 58325	1344 bp upstream