rs31501983 SNP Detail

Summary

• ID
  rs31501983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115748266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGTTCA GCTGTCACAT
  CTTTCAGAGA AACTGTGCTC TGTCAAAGTC CACCCCTCCC GACATACTGT CTCCATCAAG
  ACTGCACCTC CTAAGCTTCC CCAAGCGGGT TACTAACTGA GGACCAAGTG TGTTAATGCC
  TCAGGCCATG GGAGACATTT CTTATTCACA GCAGCACACT TAGTGGTGTT TTATTTAGAA
  Y
  CCTTTTTGAG GTGTCAAACT CTTCTCTTGT CTTGAGACCT AACAGACTTT GGAGGGCAGG
  GGCAGAATAC TGGCTGTCCT TTTTGTCTCT TTATACTATT GATTTCAATC TTTAAGCATG
  GCTATTGAAC ACCCAGAAGT TCCATTAAAA ACAGTCTCGA AGGAAGAATG ATGATGGAAA
  TTTAAATTTT GTAACACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48058343	NES11878797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31501983					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058343	NES11878797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115748266 () rs orientation: forward

Symbol	Name	Function Class
Gm44180	predicted gene, 44180	978 bp upstream
Rr637050	regulatory region 637050	1061 bp distal
Rr637051	regulatory region 637051	602 bp distal
Rr637052	regulatory region 637052	169 bp distal
Rr637053	regulatory region 637053	866 bp proximal
Rr637054	regulatory region 637054	1086 bp proximal
Rr637055	regulatory region 637055	1280 bp proximal
Rr637056	regulatory region 637056	1520 bp proximal