rs31501979 SNP Detail

Summary

• ID
  rs31501979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115746311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGAACT CTAGTGGCTT
  TATAATTATA ATTATAATTA CATCCAAAGC ATCTTTTTTT TAATATAGTT TAATCTATTT
  TAATAGCAAA CTTACAGGAA CAGCACAAAA GACTGACAAC ATTAAAAACA TGTACTTGTA
  TGTAGGACAA CTCAGAAAAG TATAGTGAAT GGATGGAATT TACGGTGTGA TAAAAATGCT
  R
  CAAACACCAT TTAGTTGCCG CCAATAAGAA ATTTACTTAT TTTTTAAAAA TCCAAATGCT
  GGCATTGTCC AGAAATTTTT TTTAAAGATT TATTTATTAT TATACATAAG TACACTGTAG
  CTGTCTTCAG ATGCACCAGA AGAAGGCATC AGATCTCATT ACCGGTGGTT GTGAGCCACC
  ATGTGGTTGC TGGGATTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058339	NES11878873	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31501979					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058339	NES11878873	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115746311 () rs orientation: forward

Symbol	Name	Function Class
Gm44180	predicted gene, 44180	570 bp downstream
Rr637049	regulatory region 637049	772 bp distal
Rr637050	regulatory region 637050	873 bp proximal
Rr637051	regulatory region 637051	1332 bp proximal
Rr637052	regulatory region 637052	1542 bp proximal