rs31501203 SNP Detail

Summary

• ID
  rs31501203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171678499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA GAATCACAGT GAGGGATTTT
  Y
  TTATATTAAA ATATGTTTAT CTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45040605	mCV24401573	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss49748416	NES13030761	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	C	C	C		T	C	C	C		C
ss120003771	PARCsnp_1.15963	PARC_SEQ	INBRED	f	SNP								T		C
ss120006288	PARCsnp_1.05412	PARC_SEQ	INBRED	f	SNP								T		C
ss146176072	ENSMUSSNP2921351	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
ss320121290	CHEV_1_173781063	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31501203					SNP	C	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748416	NES13030761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171678499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			1882 bp distal
Rr423405	regulatory region 423405			1068 bp distal
Tssr292	transcription start site region 292			1276 bp downstream
Tssr10112	transcription start site region 10112			1087 bp downstream
Tssr10113	transcription start site region 10113			920 bp upstream
Tssr10114	transcription start site region 10114			969 bp upstream
Tssr10115	transcription start site region 10115			1028 bp upstream
Tssr10116	transcription start site region 10116			1050 bp upstream
Tssr10117	transcription start site region 10117			1063 bp upstream
Tssr10118	transcription start site region 10118			1082 bp upstream
Tssr10119	transcription start site region 10119			1098 bp upstream
Tssr10120	transcription start site region 10120			1119 bp upstream
Tssr10121	transcription start site region 10121			1160 bp upstream
Tssr15122	transcription start site region 15122			1410 bp upstream
Tssr15123	transcription start site region 15123			1395 bp upstream
Tssr15124	transcription start site region 15124			1384 bp upstream