rs31500518 SNP Detail

Summary

• ID
  rs31500518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153429579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGCAGC ACCACTCCAG
  AGCAAGCACA CTCACACAGA CAGAAGATGC ATGACAGGGG AAAAACCAAT AGAGGAAGAC
  ATGACCAACA ACAGGACATG GCAGGCGCCT TGATTTCCTT TTAGCAAATG ACACAAATAA
  ATAGAGACGA TGTGGTGACC TAGTTCCAGT TCCTGTGAGT TCAAGTTGCA TTCTGTGATA
  Y
  CAATGGATTA TTTCCTCCTA ACTTTGCCAC CCTTGGGGAA AAAAAAAGAA AAGAAAAGGC
  GTGGAAAGTG TTCCAAAACA AACGGCAAGC TCAGGAAAGT CACAATAAGG GTCTGCTGCC
  TCGCTTCATG AGAGGGAAGG ATGACTGGTA CAACTTCAAC AGCAGCCCAA GACTATATTA
  AGTGCTACGA CACACAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45541116	mCV23571640	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136111683	ENSMUSSNP3392081	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31500518					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153429579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13961	CpG island 13961			663 bp proximal
Rr587739	regulatory region 587739			30 bp distal
Rr587740	regulatory region 587740			107 bp proximal
Rr587741	regulatory region 587741			1222 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			29 bp downstream
Tssr36240	transcription start site region 36240			1162 bp downstream