rs3149835 SNP Detail

Summary

• ID
  rs3149835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118525914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTACAAGG TCAGTTATTG TGTTAGGTGT GAACTCCTCA
  ACCTCATACC CCCAAGCCCA TTTCTCCTGA GACAGGAGGA CAGGGACCTG GAGCCATGGA
  M
  TCAGAAGGAT ATATATATAT ATATATATCC ACATATATGT TTTTGGTCTT TTTCCACATA
  AAACCTGTGC AGTCACATGT ATGTACCAAC CATCAGATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45225946	mCV22538139	ABI	CRAMUS_MOUSE	f	SNP	A	A
ss320471349	CHEV_2_118521169	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149835					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118525914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			988 bp proximal
Pak6	p21 (RAC1) activated kinase 6			Intron
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			149 bp proximal
Rr563300	regulatory region 563300			429 bp proximal
Rr563301	regulatory region 563301			1359 bp proximal