rs31494231 SNP Detail

Summary

• ID
  rs31494231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115677630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTATGA GCATTTTGCC
  TGCCCTTGCA TGGATGGTAC TCACAGAGGC CAAAACGGGT GTCATATGTC CTGGAACTAG
  AGTTACAGTC AATTGTAAGC TGCCATGTGG GTGCTGGGTC CTCTGCCACG TGGGTGCAGT
  GGACCCTGGG TCTTTTGCAG GAAGAAAGAT CCAAAGCCTA GAACCAAGAA CCAGTGAGAG
  Y
  CATCCAAGAA AGAGGGCCAG AGCTTAAATG CCATACCTTT AATGCCTAGA ATTAAACTTA
  CGGCATTCCA GAATCACTGT GGACATGTGA AGATTCCACC CCCAGACCTT TTTATTTGTT
  TATCTATTTT ATTTTATTTG TTTGTGTATA TGTGCAGGTG TGCACAGCCC ACAGAGAGAA
  GAGGCAGGTG GATCAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057491	NES11881388	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31494231					SNP	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057491	NES11881388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115677630 () rs orientation: forward

Symbol	Name	Function Class
Gm38879	predicted gene, 38879	861 bp upstream
Rr379973	regulatory region 379973	1500 bp downstream
Rr637028	regulatory region 637028	1676 bp distal
Rr637029	regulatory region 637029	1765 bp distal
Rr637030	regulatory region 637030	1531 bp distal
Rr637031	regulatory region 637031	167 bp proximal
Rr637032	regulatory region 637032	819 bp proximal