rs31494229 SNP Detail

Summary

• ID
  rs31494229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTATGC TGGGGTCCAT
  CCCAGGGGCA GCTTATACCA TAAAAACTTA TACACAAGTG CAGGAAGTGC TGTTGGGTGG
  TTGATTTGGG TCCAAGCTCA TTGTGGGTAA CTATACAAAA CAGTTCTACT GGCTTCCATC
  ATCAGTGGTT TCCAAGGACG CAGGACATAA CAGAATATGC AATCAATCTC GGCATTAGAA
  R
  GTTTCCTAGT GATAGCAGAA ACACGAGAAA GTTTCCTTAT GATGGCAGGC TAACAAGGTA
  GCAGTTACCT AAGCCTTAAC ATTTTACCTA GGCCTTAACA TTCCATCTAA GCCTTAATAG
  TTTTCCCAGG TCCTAACATT CTGTCTCGGC CTTAATACTT TACCTAGGTC CTAACAGTGT
  GTGTGCTCGA GGAGGTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057489	NES11881395	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31494229					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057489	NES11881395	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676984 () rs orientation: forward

Symbol	Name	Function Class
Gm38879	predicted gene, 38879	1507 bp upstream
Rr379973	regulatory region 379973	854 bp downstream
Rr637027	regulatory region 637027	1630 bp distal
Rr637028	regulatory region 637028	1030 bp distal
Rr637029	regulatory region 637029	1119 bp distal
Rr637030	regulatory region 637030	885 bp distal
Rr637031	regulatory region 637031	813 bp proximal
Rr637032	regulatory region 637032	1465 bp proximal