rs31494225 SNP Detail

Summary

• ID
  rs31494225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115675753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAACTCC AGTCTGAGTG
  TAGCTCTATT GGAGTAGATC TTAGTGCCAC ACATAAGAAA CACACAGAGA TGTTTTTCTA
  AATATAGAAA TGAGTGGTTT AAAAAAAAAA CCAAACTTTT TTATGTTTAC ATTTTTCTTT
  TATCTAATTT TAGTAAAGAT TTTCTATTTT AAAACTCCTT TAAGATTTAT CCTATTTTCT
  K
  TGTAAGAGCG TTTTGCTCGC ATGTGTGTAT ATGCTAACTG TTTGTGTTGG GGTCTAGGAA
  TCTCCTCACC AACCACATGA ACACCCATCT CAGTCAGACA GGGGGAGCTA TTGAGCACAC
  ACCCCAGGGC TGATCACCAG GGACATGGTC CACATTCAGG AACTGAACCA TGACCCGGAG
  TTAAGAGCCT ACAGTGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057485	NES11881408	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31494225					SNP	T	T	G	T	T	G	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057485	NES11881408	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115675753 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	within coordinates
Rr637026	regulatory region 637026	1870 bp distal
Rr637027	regulatory region 637027	399 bp distal
Rr637028	regulatory region 637028	within coordinates
Rr637029	regulatory region 637029	91 bp proximal
Rr637030	regulatory region 637030	325 bp proximal