rs31493665 SNP Detail

Summary

• ID
  rs31493665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115675207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCACCTT CTCAAGTGAG
  AATTGAAGGA TGGGCCACAC CTAGGCCAGA GCATTTGCAA AACTTGACCT CAATCTTCCT
  ACCTACTTCA AGAATCCGCC AGGAAAGAAT GCATGGGAAA GCCAAAGGGA GAGGCCCCAT
  GCCCCATTGT CTCAGCTGAG CTTGGGATTC CAGCTGTCTC CACCGAGGTC TCAGCTCTGA
  R
  TATGAGCCGA GTCGGGCATT CCGGGCCAGC TAAGACACAT GCATTTGTCC CCACCAGCAC
  GGCCTGACTA AGCCCAGGCT ATCCGTGGAC ACCTCATTGA TCGTCATGAC AACCACTGAG
  GCTCCTGCAT GTCCCCTAAG TGCTCATTTC TGTACATCAC TCGCCCGGAG CAGACAAGGA
  CCCAGCAAGT GATGTCACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48057475	NES11881432	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31493665					SNP	A	G	A	G	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057475	NES11881432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115675207 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	within coordinates
Rr637026	regulatory region 637026	1324 bp distal
Rr637027	regulatory region 637027	within coordinates
Rr637028	regulatory region 637028	541 bp proximal
Rr637029	regulatory region 637029	637 bp proximal
Rr637030	regulatory region 637030	871 bp proximal