rs31493101 SNP Detail

Summary

• ID
  rs31493101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAAGTT CACTGATGCC
  CTTGTGACCT CCAGCATTGC AAAGCTTTGG GAAGATGGTT CTAAATAGAA CATCTTGAGT
  TAATTGAAGT GTGTTGTGAA ACGGTTGCCG TGGTTCCCGA AATAGCAAGT GTTGGCAAGG
  AACAATAAAT TTGTGTGAAC CACTACAAAA AAAAAGCCAG TACAGAGAGA AAATGAATGT
  Y
  AAGTTCCCAT TGGGGCTCGG CCCAGCACGT AGGTAAATGA CTCTGAACAA GGAAGAAAAG
  GGGTTGGCAC CTTCTCAAGT GAGAATTGAA GGATGGGCCA CACCTAGGCC AGAGCATTTG
  CAAAACTTGA CCTCAATCTT CCTACCTACT TCAAGAATCC GCCAGGAAAG AATGCATGGG
  AAAGCCAAAG GGAGAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057471	NES11881426	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31493101					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057471	NES11881426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674943 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	within coordinates
Rr637026	regulatory region 637026	1060 bp distal
Rr637027	regulatory region 637027	within coordinates
Rr637028	regulatory region 637028	805 bp proximal
Rr637029	regulatory region 637029	901 bp proximal
Rr637030	regulatory region 637030	1135 bp proximal