rs31492541 SNP Detail

Summary

• ID
  rs31492541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTTGGT TCCTTCCTTA
  TCTCATGCAG CCTAGCCCTC CTTCTCTTCC AGGTTTCCAA CATGCCTTTC CAGCCTAGGA
  CCCAAAACAT GTGGTCGGCT GGCCGGACAC AACAGGTACA CACATATAAG TAAAAACAAA
  ATAAATATTT TAAAAGTAAT ACCGTGGTTT AAATTTTCCT TAGGTTCAGT AAATGAAACC
  R
  TCATTTCCTG TCTTTTGGTT TTGTTTCTGG TTTTGGTTTT GTCCTGGGCC TGAGTTTGTC
  CTTCATCTCA AGCCTTATCT TTATGTCTCT TGTTCCAAGG CAAAAGAAAA ATATTTCCCC
  GTGTGACTCT GTGCAAGTTC ACTGATGCCC TTGTGACCTC CAGCATTGCA AAGCTTTGGG
  AAGATGGTTC TAAATAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057461	NES11881414	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31492541					SNP	A	G	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057461	NES11881414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674613 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	120 bp upstream
Rr637025	regulatory region 637025	1928 bp distal
Rr637026	regulatory region 637026	730 bp distal
Rr637027	regulatory region 637027	within coordinates
Rr637028	regulatory region 637028	1135 bp proximal
Rr637029	regulatory region 637029	1231 bp proximal
Rr637030	regulatory region 637030	1465 bp proximal