rs31492539 SNP Detail

Summary

• ID
  rs31492539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATTAAA ATTGAACTTT
  GAGCAGAGAG CTTTGTCTTG GTTCCTTCCT TATCTCATGC AGCCTAGCCC TCCTTCTCTT
  CCAGGTTTCC AACATGCCTT TCCAGCCTAG GACCCAAAAC ATGTGGTCGG CTGGCCGGAC
  ACAACAGGTA CACACATATA AGTAAAAACA AAATAAATAT TTTAAAAGTA ATACCGTGGT
  W
  TAAATTTTCC TTAGGTTCAG TAAATGAAAC CATCATTTCC TGTCTTTTGG TTTTGTTTCT
  GGTTTTGGTT TTGTCCTGGG CCTGAGTTTG TCCTTCATCT CAAGCCTTAT CTTTATGTCT
  CTTGTTCCAA GGCAAAAGAA AAATATTTCC CCGTGTGACT CTGTGCAAGT TCACTGATGC
  CCTTGTGACC TCCAGCATTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48057459	NES11881412	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	A	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31492539					SNP	T	A	T	T	A	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057459	NES11881412	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674581 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	152 bp upstream
Rr637025	regulatory region 637025	1896 bp distal
Rr637026	regulatory region 637026	698 bp distal
Rr637027	regulatory region 637027	within coordinates
Rr637028	regulatory region 637028	1167 bp proximal
Rr637029	regulatory region 637029	1263 bp proximal
Rr637030	regulatory region 637030	1497 bp proximal