rs31490263 SNP Detail

Summary

• ID
  rs31490263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115671967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCCTC TGCCTCCTAG
  GGACCGGCCA CAAGCTTGCA ACTACTTTCA CCTTTTCTCA CAAATGAATA AGACCCTGGT
  TATCCTATAT CCCACATTTT GGAAGGTCCT GGACCCGCTG GCCTTATCCC AAGCTTAGCT
  TCCGTGCTAC GCACCTCAGC TGCCTCGACC AGAGCTGAGA ATGCAGGTAT CCACTGCTAC
  Y
  GCTCCTACGC TCCTACGAGG TGGCAACCCT CCTCCCTCGA CCCGCGAGTG CTGGACTCAC
  AAGCACGAAC CTACATAGCC GGCTTCCACA CTTTTTTGTT TTTGGTTTTT TGGTTTATTT
  TAAATACCAG AAAAACAAAT ATTTGTTTAT ATTGACAAAA AATAAGTAAG AGAAAGCTTG
  CATTCCCCAA AGTAAGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057433	NES11881541	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490263					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057433	NES11881541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115671967 () rs orientation: forward

Symbol	Name	Function Class
Rr637023	regulatory region 637023	1891 bp distal
Rr637024	regulatory region 637024	1400 bp distal
Rr637025	regulatory region 637025	within coordinates
Rr637026	regulatory region 637026	1895 bp proximal