rs31490261 SNP Detail

Summary

• ID
  rs31490261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115671385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGAGAT GATCTTTTCT
  CAGCCTCCAG GAGCACCCTC TTGTCCACTG AGGCTGGAAA AACCCAGCCC AGTCCCAGAT
  GCTGGGCCCC AACTGGAATA TCTGCCAGGC TGCTATGCAG CCGTGTGATC AGCCGGTTTA
  TAGAGAAGTT GGGGAACATT CTCACACCCC AGTCCCACCC TAAGGTTGGA TTCCTCAGGC
  Y
  GGAGTGGAGT CTTCACCCCT AAGAACTTGG CTAAGAAGCA GGGCACACAT GGATGCTCAG
  GCCTGCCCAG AGGCTGGCCT CCTCTCCCTC TGCTCGAGGT TCAGGTCTGA GGCCCCTCCA
  TACACCCACA AACTGCGGTG ACCTGTTTCT AAATAGATCT CATTTGGGCC ATGACTTTGA
  ACACGTGCCA ACAGGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48057431	NES11881540	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C		T	C	C	T		T
ss321916382	CHEV_6_115644442	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31490261					SNP	C	C	T	C	C	T	C	C	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057431	NES11881540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115671385 () rs orientation: forward

Symbol	Name	Function Class
Rr637022	regulatory region 637022	1483 bp distal
Rr637023	regulatory region 637023	1309 bp distal
Rr637024	regulatory region 637024	818 bp distal
Rr637025	regulatory region 637025	within coordinates