rs31490259 SNP Detail

Summary

• ID
  rs31490259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115670359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATCTCT CCAGCCCCAT
  TGTTTTCTCT TTGCCTGTTT TTACACTGGG TCTCAAGCAG TTCAGGCTGT CCTTGAACTC
  ATGAGGTAGC TAAGGACGAC CTTAAACTCC TTCTAATCAC CCTGCTTCCA TCTCCCAAGT
  GCTAAGGTTA ATAGGCTTGC ACCACACCCA GCCAGGTGTG CACTGCTGCC TGGGAAAGGC
  Y
  AAGGGTTAAA ACCAGAGAGT CTGGCTGACC TTTTAAGATT CTTTGTGGTA CCTGAGTGTT
  GCAACTATCT TGACTGTGCC TGCCCTCTCC TGTGGAAGGC TCAAGAAACC AGCTATAATT
  AAGAAAGAAC CAATAGCTTG TGGTTAGCCA CGTGTGACTG TGGTTTTGAG GCCTGGATCT
  GTCACCTGCT GCCTGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057429	NES11881603	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490259					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057429	NES11881603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115670359 () rs orientation: forward

Symbol	Name	Function Class
Rr637022	regulatory region 637022	457 bp distal
Rr637023	regulatory region 637023	283 bp distal
Rr637024	regulatory region 637024	within coordinates
Rr637025	regulatory region 637025	766 bp proximal