rs31490257 SNP Detail

Summary

• ID
  rs31490257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115669506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCTGCT GCTAAACAGC
  ATATGTTAAC CTTCAGATAT TAGCCTTTAT TTAACCACAA GTAAAGACAG ATAAGGATTA
  AGTTTCCCCA GCAATCATTT AAGCATAAAA AGTTAAGTTT TAGAGCTTAC TGAGGCACAG
  AACAGCAAGA AAGCGTTAAG TCTCCAGGGT TAAGTAGTGT ACAGAGAGTT TTATAAAGCA
  R
  AAATAAATCG CAGAGAGTTA AAGAAAAAAG AAGCCAGTGG TTTTCAGCCA CAGAATAAGC
  AAGGGAGTGT TAAGTTTCCA GAAGCCATCA GTTTCTAGTC TCCAGTCGAG TCAGAGAGAA
  TTAAAAGGCC GGAAATTATC AGTCCTTTGG CTTTTGTCCA ACTCTGTGTT CCACCTCAGC
  TTGTCCCCTA CGGCCAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057427	NES11881641	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490257					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057427	NES11881641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115669506 () rs orientation: forward

Symbol	Name	Function Class
Rr637022	regulatory region 637022	76 bp proximal
Rr637023	regulatory region 637023	549 bp proximal
Rr637024	regulatory region 637024	812 bp proximal
Rr637025	regulatory region 637025	1619 bp proximal