rs31488889 SNP Detail

Summary

• ID
  rs31488889
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:74878169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTCAGCC ATCCCTCCTG
  GACACATCAT CACTGGCTTG GATAGAAGTG CTGGATGCTC CCAGATCCCA GGACATGCCG
  TTTTCTAGCC TTATTTATCT TCTCATTCTT CACCCCTCAG CCTAAAAATA TGACTGCCAT
  GTACCCCTCC TGCCTGCTGT CCCCTAAGCT GTCTCCTTGT TCTCTCTTTT TTTAAGGAAA
  K
  GTTCCTAATT AACCTGTAGC AGAAAGAATG GGGGCGCGCG GGGGAGGGGG TTGTTTGGTC
  CGCCCTTCCT GGCTGTTGCC ACCTTGCAGG TTATGACACA GTGACAGAGG GAGGTCTGAG
  GAAGGAGGCA ACCAGGAGGG GCTTATTCTT TTGGAGCTCC GGGAGCCTCT TGATACAGAC
  AGCGTTTCCT ACTTTCCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss39295236	mCV22616878	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss139745207	ENSMUSSNP65974	ENSEMBL	ENSEMBL_Sanger	f	SNP				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31488889					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:74878169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6729	CpG island 6729	813 bp distal
Cpgi6730	CpG island 6730	470 bp proximal
Gm41210	predicted gene, 41210	within coordinates
Htr2a	5-hydroxytryptamine (serotonin) receptor 2A	145 bp upstream
Rr495315	regulatory region 495315	within coordinates
Tssr126570	transcription start site region 126570	141 bp upstream
Tssr126571	transcription start site region 126571	168 bp upstream
Tssr126572	transcription start site region 126572	570 bp upstream
Tssr126573	transcription start site region 126573	624 bp upstream
Tssr126574	transcription start site region 126574	648 bp upstream
Tssr126575	transcription start site region 126575	776 bp upstream
Tssr126576	transcription start site region 126576	794 bp upstream
Tssr126577	transcription start site region 126577	1251 bp upstream