rs3148879 SNP Detail

Summary

• ID
  rs3148879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93886916 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCC GCGCGGGCTT CTCCGCGCAC
  R
  GAAGCCTCCT TTCTGCAGCC GGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39419462	mCV25392291	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	C	C
ss148576884	ENSMUSSNP2665903	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3148879					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93886916 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Cpgi8494	CpG island 8494	643 bp proximal
Gm31175	predicted gene, 31175	913 bp upstream
Gm60844	predicted gene, 60844	955 bp upstream
Rr520041	regulatory region 520041	1701 bp distal
Rr520042	regulatory region 520042	1116 bp distal
Rr520043	regulatory region 520043	966 bp distal
Rr520044	regulatory region 520044	465 bp distal
Rr520045	regulatory region 520045	703 bp proximal
Rr520046	regulatory region 520046	1627 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1123 bp downstream
Tssr139540	transcription start site region 139540	807 bp downstream