rs31488243 SNP Detail

Summary

• ID
  rs31488243
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86741370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGAAAAG TTTTATAAGA TATCCTTATC ACTCCCATTT
  TGAAGAAGAT TAAATAAATA CATATTGGAG ATGGGGTAAA AACTAACAGG ACGCATTTTT
  W
  AAAATCTATT AGAGGCCTTC TTCATCAGCC ACTACAAAGA GCCAGATAAT CCAACTCGCT
  CAGATAAAGC AACGGCAGCC CTGCCTATAC ACAGAGTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45539840	mCV24929950	ABI	CRAMUS_MOUSE	f	SNP		A	A			T
ss46736123	NES10752233	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		A	A	T		T		A
ss135449557	ENSMUSSNP349832	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320829831	CHEV_3_86637985	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31488243					SNP	A	A	A	A	A	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736123	NES10752233	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86741370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579396	regulatory region 579396			395 bp distal
Rr579397	regulatory region 579397			1285 bp proximal