rs31487864 SNP Detail

Summary

• ID
  rs31487864
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101191978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATCACCAT CCAGCAGAGC ACATCAGGTA GTCTCAGGGC
  TGCCTGGCAA GAAACTGCCT GTCTTTCTAG AGTGAAAAAC CTTCTTCGTA GTAAGATCCA
  W
  TTATTTCAAG AAACACTGAT CAAATTTTAA AAGGCTTTAA AGGCAGTTGG AGATCACCTA
  CAGTTCTGTT ATTCGGGACT ATTAACACTT TGAGGCATA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45540288	mCV22286681	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss46813196	NES10715769	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A		A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31487864					SNP	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813196	NES10715769	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101191978 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	1056 bp distal
Rr581991	regulatory region 581991	1119 bp proximal
Tssr30894	transcription start site region 30894	505 bp downstream
Tssr30895	transcription start site region 30895	1903 bp upstream
Tssr30896	transcription start site region 30896	1978 bp upstream
Tssr34778	transcription start site region 34778	1501 bp upstream
Tssr34779	transcription start site region 34779	693 bp upstream