rs31486048 SNP Detail

Summary

• ID
  rs31486048
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146796726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT TCTAGAATTT AGCAATGAGC
  M
  TGGTTCAACT GTGACTCAGG GCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45538567	mCV23261500	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					A		C
ss61096409	NES16600915	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	C		C	A	A	C		A
ss136047120	ENSMUSSNP1926741	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321011269	CHEV_3_146753935	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31486048					SNP	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096409	NES16600915	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146796726 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	953 bp upstream
Rr587122	regulatory region 587122	1311 bp proximal
Rr587123	regulatory region 587123	1678 bp proximal
Rr587124	regulatory region 587124	1783 bp proximal