rs31485831 SNP Detail

Summary

• ID
  rs31485831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCACCTC ATAGAGGCAG
  GGGGAGGACA TAGGGGGCTT GTGGGGGGGG GACTGGGAAG GGGAACAACA TTTGAACTGA
  AAATAGAATA ACCACTTTTT AAAAAAGAAA AAAAGAATCA AGGAAAAGAT GCAAACACCA
  GTGTCTTGGC TCAGAGTTTT TGTCTTCCCT TCATCGTATT TCAATCACAC ATCCAGTAAG
  Y
  GTTACTACTG TTAGTAAGAT TAGTAGCTTC TTAGTGTATT TGCCTCTTTA TCCAAATGTA
  AACGCCTGGG GACAGTACAC AGTGACTCAG CATGGCAGTA GTCAGGAAGC AGGCTCTGGT
  CACTGTGACC TTCTCGCAGA GACCCTGGGA AAACAGCTTT AAGTTTAGAA TGACTGTGGG
  GATTGGATGG TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45538967	mCV24210991	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136100943	ENSMUSSNP3808240	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321028147	CHEV_3_151783046	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31485831					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			24 bp proximal
Rr587461	regulatory region 587461			1490 bp proximal
Tssr1098	transcription start site region 1098			14 bp downstream
Tssr32394	transcription start site region 32394			228 bp upstream