rs31485562 SNP Detail

Summary

• ID
  rs31485562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27166146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTGAAA AACTTTGCCA
  ACATGTGAGA CACTTTTGGT TCCAAGCATT TTGAAAGAGG AATATTCTGC CAATACTATC
  CATACCTAAG AAGGCCGATG GAAATTACGG GATAGGAGCG AAGGAAGCCA GAGGCTGAGG
  TGGCAAGCAA GACGGCACAG TGATAGGAAA CAAGGTCATC CTAAGTGCTA AGGAAAGTCA
  R
  ACGAGTGGGT ACAGTGTCTG CTTTTAACTT AACCAAGAGG CAAGGTGCAG CACTCTCTCC
  TCCACTTGAA GCAAAGGGGG AAGATGCCTC TGGCCTAGGA AGAATTAAGT TCAGGCCCTG
  GACTTGAAAC TCACCAAAGG GCATACCATG ATGAAACCAA TACTGAGCAA AGTTCCAAAA
  CCAGGGGCTA TACTGAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MSM/Ms	NZW/LacJ
ss45539544	mCV24739769	ABI	CRAMUS_MOUSE	f	SNP	G	G	A			G	G
ss60380574	NES15885332	PERLEGEN	MM_PANEL2	f	SNP			A	A	A				G
ss134702125	ENSMUSSNP3565494	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MSM/Ms	NZW/LacJ
rs31485562					SNP	G	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380574	NES15885332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27166146 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574346	regulatory region 574346	814 bp distal
Rr574347	regulatory region 574347	904 bp distal