rs31485529 SNP Detail

Summary

• ID
  rs31485529
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115587698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCTGCA GCAGGTGGAG
  CTGTGGGTCC TGCACCCAAC CCTTCGCCCT CCTCAGGCCT GCATAGTCCT CACCCTTCTC
  CTGACATTGC CACATCTGTT ATGAGGACAC ATTCGAATGA ACCTGGAAAA CGGGAGAAGA
  AGACGCTGGT GCTCAGAGAC CGCAGTGAGT GAAGTGCAGC TTTTGCTGCC TCTGGGTGTG
  M
  TGCTCTCGGG CTCTCAGGCC TCCTTCTCAC GACACTCCTG ACACTCCAGG AGTCTAGAGT
  TGATCTGAAA ACAGGCTGCA GAGCTTCAGA GGTGGCTCTC CACAGCTTGG CTGAGCTCCA
  CTTTGAGCCC AGCAAAGCAT CAGAGGAGTC TTTTGTCCCA TGAAGTTGCC TCTTCATAGG
  AGTCACCGAC TATTCACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48056969	NES11883256	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31485529					SNP	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056969	NES11883256	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115587698 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mkrn2	makorin, ring finger protein, 2			Intron
				Noncoding-Transcript-Variant
Rr637006	regulatory region 637006			1332 bp distal
Rr637007	regulatory region 637007			1406 bp distal