rs31482945 SNP Detail

Summary

• ID
  rs31482945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135393954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACGAGA GACAATGTAT
  ACTCATTAAA GCAACAGCAC AACGATGATA AGAGCTATTA ACTCTACCAA ACTATGTGGT
  TTTCAAGCCT CTCCCCAGAC CTTCCAAGAC TGCCCTTCTT CCAAGCATTC CCCCTGAGGC
  TGAGTGCCTG CATTTGGCTA ACAGCCTCAA ATCTCTGTGC TCTAACAGAA GGCATCTGCT
  R
  GGATACATCT GTTCTTACTC TTGGACCTGC TCACCTCTAA CACGACAATC AGTTTCAGTA
  CTGACGAGAG GTACACAAGC GCAAGTCACA ATCACCAGAG GCAGACGAAA GCGCCCAGGT
  AGTCCATCAG CTCTAGTCAG ACAGAAAGGC AGGCACAAAG TACGGTAGAG TCTTCTAGCA
  CTAAAATCCT ATTTGACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45539023	mCV25339248	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135928521	ENSMUSSNP764739	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31482945					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135393954 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	1944 bp upstream
Rr585765	regulatory region 585765	1351 bp distal
Rr585766	regulatory region 585766	within coordinates
Tssr31841	transcription start site region 31841	927 bp upstream
Tssr31842	transcription start site region 31842	946 bp upstream
Tssr31843	transcription start site region 31843	958 bp upstream
Tssr31844	transcription start site region 31844	980 bp upstream
Tssr31845	transcription start site region 31845	1041 bp upstream
Tssr35822	transcription start site region 35822	265 bp upstream
Tssr35823	transcription start site region 35823	1062 bp downstream
Tssr35824	transcription start site region 35824	1585 bp downstream