rs31482091 SNP Detail

Summary

• ID
  rs31482091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120740949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGCCCCGT TTCCTCCCAA TGCACCAAAT GGCATCAGGT
  CTAACCTATA ATCTGCCATA CTGTAGTAGT AATACATGAA ATAAGATGGA ATGAGGGGTC
  Y
  AGTTGTCCAA GGACTAGCAG AGAACATGTT TAATTTTGCA CAATGAGCCA TCATTTGGAA
  ACCTTTCAGG GATCACCCAT ATCTATCCTT CTTGCCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45539309	mCV24001934	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss51608234	NES14666148	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	T	C	T	T	C	T
ss135710285	ENSMUSSNP6499132	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31482091					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608234	NES14666148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120740949 () rs orientation: forward

Symbol	Name	Function Class
Rr583995	regulatory region 583995	93 bp distal