rs31482083 SNP Detail

Summary

• ID
  rs31482083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115585260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTTCCA CCAGCTTAAC
  CTGAAGGCAA GCCTGTTATT GCTTTTTCTT GACTAGTAAT TGGTGTGGGA GGGAGAATCC
  AGCTCACTGG GCTGAGCAAA CCAGTCAGCA GCATCTCTGC CTTGCGTTCC CTCAGTAATG
  GACTGCGACC TGGGAATTGA AAGCTGAAAT AGACCCTTTC TAACTCACAG TGCTCTGGTC
  M
  TGGTGTTCAT CATAAGAGTA GAAACCCAGG AGGATACTGG ATAATGTGAT AATTTAGTCA
  TATAAGCAAT CCCTGGAGCT CTACATGTTA GACAAATATG CTGAACCCCA CAGTCTTCCC
  CCTTAACTGC CAACAGTCGC TCTGCTTTCT GCTTCTGTGA ATTTAACTAT TCAAAGTACC
  TTACATGAAT CTGTTGGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056933	NES11883237	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	A	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31482083					SNP	C	C	A	C	C	A	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056933	NES11883237	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115585260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44157	predicted gene, 44157			within coordinates
Mkrn2	makorin, ring finger protein, 2			Intron
				Noncoding-Transcript-Variant
Rr637005	regulatory region 637005			489 bp distal
Rr637006	regulatory region 637006			935 bp proximal
Rr637007	regulatory region 637007			1011 bp proximal