rs31480476 SNP Detail

Summary

• ID
  rs31480476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115217112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGCATA AAACCTCTTT
  CTGTATGGTG CCACCTTCTG AAGATATTCT ACGTAATTTC ATTTAATCTT CATGATAAGC
  TTACCAGGGA GGTATTATTA TTTTCACTTT GTACAGAGAA ATAAGACCCA GGAAGGATCA
  AGTCACTTGC CAAACTTACA GAGCCAAGAT TTCTGTAAGT TGCACTGCCT GTCACACAAC
  R
  TGAAGAAGAG CTGGCTTGAT TCCCTCCTCC ACAGTCAGTC TAGAAACCTT GGAGGGCTGT
  GGAAATGATT AGGCTGAGAA AGTATTGACA GAATGAGGCA TGAGGGACCG GGATGCCTGG
  GTACTCCCTC GCTAGCTCTG CTGCCCCAGG CTGGCCTCAC GGAAGGAAAT GCTCGCCTCT
  AATCGTATCC TCTTCATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056116	NES11884908	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31480476					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056116	NES11884908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115217112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			998 bp distal
Rr636940	regulatory region 636940			284 bp proximal
Rr636941	regulatory region 636941			1065 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			1173 bp downstream