rs31480416 SNP Detail

Summary

• ID
  rs31480416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104847794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGT GTCAGCATGT GGGTCCTCAC
  R
  TTTAGGAAAT ACTTAAGCCT TTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45537373	mCV27551451	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss60431376	NES15935839	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A		G	G	A	A	G		G	G	G	A
ss135572354	ENSMUSSNP4514701	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31480416					SNP	A	A	A	G	G	A	A	G	G	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431376	NES15935839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104847794 () rs orientation: forward

Symbol	Name	Function Class
Gm65748	predicted gene, 65748	338 bp upstream
Rr582631	regulatory region 582631	1659 bp distal
Rr582632	regulatory region 582632	207 bp proximal
Rr582633	regulatory region 582633	349 bp proximal