rs3148021 SNP Detail

Summary

• ID
  rs3148021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169944070 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGGG GTGAATGCCA GGGCCTGTGA
  R
  CGGGAGCCAG AGCACCCCCT GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37818789	NES08707517	PERLEGEN	MM_PANEL2	r	SNP	T	T	T	T		C	T	T		C	T	C		C
ss45244991	mCV22561549	ABI	CRAMUS_MOUSE	r	SNP	T	T			C		T
ss148295082	ENSMUSSNP284516	ENSEMBL	ENSEMBL_Sanger	r	SNP		T					T
ss320614800	CHEV_2_169927650	CHEVERUD	SCREENING_POP	r	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3148021					SNP	A	A	A	A	G	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818789	NES08707517	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169944070 () rs orientation: reverse

Symbol	Name	Function Class
Rr571323	regulatory region 571323	318 bp distal
Rr571324	regulatory region 571324	775 bp distal
Rr571325	regulatory region 571325	204 bp proximal
Rr571326	regulatory region 571326	1631 bp proximal
Rr571327	regulatory region 571327	1904 bp proximal