rs3148020 SNP Detail

Summary

• ID
  rs3148020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169944086 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAAAT TACATCTTCG TTGGGGGTGA
  R
  TGCCAGGGCC TGTGAGCGGG AGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37818787	NES08707519	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C		C	C	C	C		T	C	C		C
ss45201579	mCV22561548	ABI	CRAMUS_MOUSE	r	SNP	C	C					T		C
ss148295086	ENSMUSSNP5430253	ENSEMBL	ENSEMBL_Sanger	r	SNP		C							C
ss320614801	CHEV_2_169927666	CHEVERUD	SCREENING_POP	r	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3148020					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818787	NES08707519	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169944086 () rs orientation: reverse

Symbol	Name	Function Class
Rr571323	regulatory region 571323	334 bp distal
Rr571324	regulatory region 571324	791 bp distal
Rr571325	regulatory region 571325	188 bp proximal
Rr571326	regulatory region 571326	1615 bp proximal
Rr571327	regulatory region 571327	1888 bp proximal