rs31480103 SNP Detail

Summary

• ID
  rs31480103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169775567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTAGTC TGGGTGTAGC
  CCTGTAAGCA CCGGAAGACT ACCTGGCCCA GAAGCCACAG AGTAAGGGTG ACCTCTGCTG
  GCTGTGAGTG ACCACAGGAA CCTGCTACCT GAACTGTTCC ATAAGCCCCA CCACCACTTA
  GCCACGTACA CAGGTCCAGT GTCTTATGTG GATCTGTTTT CAGAGCTGTC AGTCTGACTG
  Y
  CTGTCCATGT TTTTGGTAGG CTAGATTTTA AATTATCTCC ATTTGATCCT CTTTACTCTG
  AATATAAAAA TCTGGAGGCA GTCACAAGTT ACTCAGTTTC CGATATCTCC TTTGCTTTTC
  TGCCTTTACA CTGAGCACTT AACAATGCAG TCTCCCCTGG TCCCTGTTGT TGTTTTTCTG
  CCCCTGGTTG TTCCACTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss49743330	NES13034459	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31480103					SNP	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743330	NES13034459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169775567 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	1542 bp downstream
Rr422992	regulatory region 422992	115 bp distal